Package: R2ucare 1.0.2

R2ucare: Goodness-of-Fit Tests for Capture-Recapture Models

Performs goodness-of-fit tests for capture-recapture models as described by Gimenez et al. (2018) <doi:10.1111/2041-210X.13014>. Also contains several functions to process capture-recapture data.

Authors:Olivier Gimenez [aut, cre], Jean-Dominique Lebreton [ctb], Remi Choquet [ctb], Roger Pradel [ctb]

R2ucare_1.0.2.tar.gz
R2ucare_1.0.2.zip(r-4.7-any)R2ucare_1.0.2.zip(r-4.6-any)R2ucare_1.0.2.zip(r-4.5-any)
R2ucare_1.0.2.tgz(r-4.6-any)R2ucare_1.0.2.tgz(r-4.5-any)
R2ucare_1.0.2.tar.gz(r-4.7-any)R2ucare_1.0.2.tar.gz(r-4.6-any)
R2ucare_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
R2ucare/json (API)

# Install 'R2ucare' in R:

install.packages('R2ucare', repos = c('https://oliviergimenez.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oliviergimenez/r2ucare/issues

On CRAN:

arnason-schwarz-models capture-recapture-models cormack-jolly-seber goodness-of-fit

6.15 score 7 stars 102 scripts 477 downloads 2 mentions 30 exports 22 dependencies

Last updated from:5959e76258. Checks:7 OK, 2 ERROR. Indexed: yes.

Target	Result	Time
linux-devel	OK	132
source / vignettes	OK	316
linux-release	OK	139
macos-release	ERROR	127
macos-oldrel	ERROR	161
windows-devel	OK	77
windows-release	OK	130
windows-oldrel	OK	66
wasm-release	OK	112

Exports:coef_mixtures deviance_mixture expval_table gof_test group_data group_data_gen ind_test_22 ind_test_rc inv_logit_gen marray multimarray overall_CJS overall_JMV pool2K pooling_ct pooling_mixtures read_headed read_inp reconstitution repmat test2cl test2ct test3Gsm test3Gsr test3Gwbwa test3sm test3sr testMitec testMltec ungroup_data

Dependencies:cli coda expm generics glue lattice lifecycle magrittr Matrix matrixcalc msm mvtnorm pillar pkgconfig rlang RMark stringi stringr survival tibble utf8 vctrs

Introduction to R2ucare

Rendered fromvignette_R2ucare.Rmdusingknitr::rmarkdown

Last update: 2022-07-06
Started: 2016-08-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Estimation of multinomial mixture distributions parameters	coef_mixtures
Deviance of multinomial mixture distributions	deviance_mixture
Expected values in a contingency table	expval_table
Goodness-of-fit test for contingency tables	gof_test
Group individual capture-recapture data in encounter histories	group_data
Group individual capture-recapture data in encounter histories along specific column(s)	group_data_gen
Test of independence for 2x2 contingency tables	ind_test_22
Test of independence for rxc contingency tables	ind_test_rc
Inverse generalized logit link	inv_logit_gen
m-array: table of first recaptures	marray
Multistate m-array	multimarray
Overall goodness-of-fit test for the Cormack-Jolly-Seber model	overall_CJS
Overall goodness-of-fit test for the Jolly-Move model	overall_JMV
Pooling algorithm	pool2K
Pooling algorithm (multisite goodness-of-fit tests)	pooling_ct
Pooling algorithm (multisite goodness-of-fit tests)	pooling_mixtures
Read capture-recapture data with Headed format used by program E-SURGE	read_headed
Read capture-recapture data with Input (.inp) format used by program MARK	read_inp
Reformat outputs of multinomial mixture distributions parameters	reconstitution
Replicate and tile a matrix	repmat
Test2.CL	test2cl
Test2.CT	test2ct
Test3G.SM	test3Gsm
Test3G.SR	test3Gsr
Test3G.WBWA	test3Gwbwa
Test3.SM	test3sm
Test3.SR	test3sr
TestM.ITEC	testMitec
TestM.LTEC	testMltec
Ungroup encounter capture-recapture data in individual histories	ungroup_data