{
  "_id": "6ab79d8b99f7aa8c6aa32eb5",
  "Package": "R2ucare",
  "Authors@R": "c(person(given = \"Olivier\",\nfamily = \"Gimenez\",\nrole = c(\"aut\", \"cre\"),\nemail = \"olivier.gimenez@cefe.cnrs.fr\",\ncomment = c(ORCID = \"0000-0001-7001-5142\")),\nperson(given = \"Jean-Dominique\",\nfamily = \"Lebreton\",\nrole = \"ctb\"),\nperson(given = \"Remi\",\nfamily = \"Choquet\",\nrole = \"ctb\"),\nperson(given = \"Roger\",\nfamily = \"Pradel\",\nrole = \"ctb\"))",
  "License": "GPL (>= 2)",
  "Title": "Goodness-of-Fit Tests for Capture-Recapture Models",
  "Description": "Performs goodness-of-fit tests for capture-recapture\nmodels as described by Gimenez et al. (2018)\n<doi:10.1111/2041-210X.13014>. Also contains several functions\nto process capture-recapture data.",
  "Version": "1.0.2",
  "URL": "https://github.com/oliviergimenez/R2ucare",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.0",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/oliviergimenez/R2ucare/issues",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://oliviergimenez.r-universe.dev",
  "Date/Publication": "2025-11-23 11:42:20 UTC",
  "RemoteUrl": "https://github.com/oliviergimenez/r2ucare",
  "RemoteRef": "HEAD",
  "RemoteSha": "5959e76258688eaeaad401363068fccb023a73a5",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-26 10:21:48 UTC",
    "User": "root"
  },
  "Author": "Olivier Gimenez [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-7001-5142>),\nJean-Dominique Lebreton [ctb],\nRemi Choquet [ctb],\nRoger Pradel [ctb]",
  "Maintainer": "Olivier Gimenez <olivier.gimenez@cefe.cnrs.fr>",
  "_user": "oliviergimenez",
  "_type": "src",
  "_file": "R2ucare_1.0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/2a742422f6623417fe4067511722216ca1d95f1138e2c6b918e3cc085549a3dd",
  "_filesize": 306325,
  "_sha256": "2a742422f6623417fe4067511722216ca1d95f1138e2c6b918e3cc085549a3dd",
  "_expires": "2027-01-04T10:25:12.000Z",
  "_created": "2026-09-26T10:21:48.000Z",
  "_published": "2026-09-26T10:25:15.259Z",
  "_jobs": [
    {
      "job": 108386603899,
      "time": 132,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10903863445"
    },
    {
      "job": 108386603901,
      "time": 139,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10904326320"
    },
    {
      "job": 108386603931,
      "time": 161,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "10904096805"
    },
    {
      "job": 108386603897,
      "time": 127,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "10904052046"
    },
    {
      "job": 108385877508,
      "time": 316,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10903308750"
    },
    {
      "job": 108386603992,
      "time": 112,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10904022027"
    },
    {
      "job": 108386603925,
      "time": 77,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10903833521"
    },
    {
      "job": 108386603920,
      "time": 66,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10904156716"
    },
    {
      "job": 108386603907,
      "time": 130,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10903793995"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657",
  "_status": "success",
  "_upstream": "https://github.com/oliviergimenez/r2ucare",
  "_commit": {
    "id": "5959e76258688eaeaad401363068fccb023a73a5",
    "author": "Olivier Gimenez <olivier.gimenez@cefe.cnrs.fr>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Delete CITATION",
    "time": 1763898140
  },
  "_maintainer": {
    "name": "Olivier Gimenez",
    "email": "olivier.gimenez@cefe.cnrs.fr",
    "login": "oliviergimenez",
    "twitter": "@oaggimenez",
    "description": "Scientist. Statistical ecology. \nModelling and conservation sciences. ",
    "uuid": 12683635,
    "orcid": "0000-0001-7001-5142"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "RMark",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "oliviergimenez",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-47",
      "n": 3
    }
  ],
  "_tags": [],
  "_topics": [
    "arnason-schwarz-models",
    "capture-recapture-models",
    "cormack-jolly-seber",
    "goodness-of-fit"
  ],
  "_stars": 7,
  "_contributors": [
    {
      "user": "oliviergimenez",
      "count": 102,
      "uuid": 12683635
    },
    {
      "user": "murrayefford",
      "count": 23,
      "uuid": 8920894
    },
    {
      "user": "b-steve",
      "count": 3,
      "uuid": 924129
    }
  ],
  "_userbio": {
    "uuid": 12683635,
    "type": "user",
    "name": "Olivier Gimenez",
    "followers": 542,
    "description": "Scientist. Statistical ecology. \r\nModelling and conservation sciences. "
  },
  "_downloads": {
    "count": 477,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/R2ucare"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/oliviergimenez/r2ucare",
  "_searchresults": 102,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/R2ucare.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/oliviergimenez/r2ucare",
  "_realowner": "oliviergimenez",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-04-13"
    },
    {
      "version": "1.0.2",
      "date": "2022-07-11"
    },
    {
      "version": "1.0.3",
      "date": "2025-11-23"
    }
  ],
  "_exports": [
    "coef_mixtures",
    "deviance_mixture",
    "expval_table",
    "gof_test",
    "group_data",
    "group_data_gen",
    "ind_test_22",
    "ind_test_rc",
    "inv_logit_gen",
    "marray",
    "multimarray",
    "overall_CJS",
    "overall_JMV",
    "pool2K",
    "pooling_ct",
    "pooling_mixtures",
    "read_headed",
    "read_inp",
    "reconstitution",
    "repmat",
    "test2cl",
    "test2ct",
    "test3Gsm",
    "test3Gsr",
    "test3Gwbwa",
    "test3sm",
    "test3sr",
    "testMitec",
    "testMltec",
    "ungroup_data"
  ],
  "_help": [
    {
      "page": "coef_mixtures",
      "title": "Estimation of multinomial mixture distributions parameters",
      "topics": [
        "coef_mixtures"
      ]
    },
    {
      "page": "deviance_mixture",
      "title": "Deviance of multinomial mixture distributions",
      "topics": [
        "deviance_mixture"
      ]
    },
    {
      "page": "expval_table",
      "title": "Expected values in a contingency table",
      "topics": [
        "expval_table"
      ]
    },
    {
      "page": "gof_test",
      "title": "Goodness-of-fit test for contingency tables",
      "topics": [
        "gof_test"
      ]
    },
    {
      "page": "group_data",
      "title": "Group individual capture-recapture data in encounter histories",
      "topics": [
        "group_data"
      ]
    },
    {
      "page": "group_data_gen",
      "title": "Group individual capture-recapture data in encounter histories along specific column(s)",
      "topics": [
        "group_data_gen"
      ]
    },
    {
      "page": "ind_test_22",
      "title": "Test of independence for 2x2 contingency tables",
      "topics": [
        "ind_test_22"
      ]
    },
    {
      "page": "ind_test_rc",
      "title": "Test of independence for rxc contingency tables",
      "topics": [
        "ind_test_rc"
      ]
    },
    {
      "page": "inv_logit_gen",
      "title": "Inverse generalized logit link",
      "topics": [
        "inv_logit_gen"
      ]
    },
    {
      "page": "marray",
      "title": "m-array: table of first recaptures",
      "topics": [
        "marray"
      ]
    },
    {
      "page": "multimarray",
      "title": "Multistate m-array",
      "topics": [
        "multimarray"
      ]
    },
    {
      "page": "overall_CJS",
      "title": "Overall goodness-of-fit test for the Cormack-Jolly-Seber model",
      "topics": [
        "overall_CJS"
      ]
    },
    {
      "page": "overall_JMV",
      "title": "Overall goodness-of-fit test for the Jolly-Move model",
      "topics": [
        "overall_JMV"
      ]
    },
    {
      "page": "pool2K",
      "title": "Pooling algorithm",
      "topics": [
        "pool2K"
      ]
    },
    {
      "page": "pooling_ct",
      "title": "Pooling algorithm (multisite goodness-of-fit tests)",
      "topics": [
        "pooling_ct"
      ]
    },
    {
      "page": "pooling_mixtures",
      "title": "Pooling algorithm (multisite goodness-of-fit tests)",
      "topics": [
        "pooling_mixtures"
      ]
    },
    {
      "page": "read_headed",
      "title": "Read capture-recapture data with Headed format used by program E-SURGE",
      "topics": [
        "read_headed"
      ]
    },
    {
      "page": "read_inp",
      "title": "Read capture-recapture data with Input (.inp) format used by program MARK",
      "topics": [
        "read_inp"
      ]
    },
    {
      "page": "reconstitution",
      "title": "Reformat outputs of multinomial mixture distributions parameters",
      "topics": [
        "reconstitution"
      ]
    },
    {
      "page": "repmat",
      "title": "Replicate and tile a matrix",
      "topics": [
        "repmat"
      ]
    },
    {
      "page": "test2cl",
      "title": "Test2.CL",
      "topics": [
        "test2cl"
      ]
    },
    {
      "page": "test2ct",
      "title": "Test2.CT",
      "topics": [
        "test2ct"
      ]
    },
    {
      "page": "test3Gsm",
      "title": "Test3G.SM",
      "topics": [
        "test3Gsm"
      ]
    },
    {
      "page": "test3Gsr",
      "title": "Test3G.SR",
      "topics": [
        "test3Gsr"
      ]
    },
    {
      "page": "test3Gwbwa",
      "title": "Test3G.WBWA",
      "topics": [
        "test3Gwbwa"
      ]
    },
    {
      "page": "test3sm",
      "title": "Test3.SM",
      "topics": [
        "test3sm"
      ]
    },
    {
      "page": "test3sr",
      "title": "Test3.SR",
      "topics": [
        "test3sr"
      ]
    },
    {
      "page": "testMitec",
      "title": "TestM.ITEC",
      "topics": [
        "testMitec"
      ]
    },
    {
      "page": "testMltec",
      "title": "TestM.LTEC",
      "topics": [
        "testMltec"
      ]
    },
    {
      "page": "ungroup_data",
      "title": "Ungroup encounter capture-recapture data in individual histories",
      "topics": [
        "ungroup_data"
      ]
    }
  ],
  "_pkglogo": "https://github.com/oliviergimenez/r2ucare/raw/HEAD/R2ucare_logo/r2ucare.png",
  "_readme": "https://github.com/oliviergimenez/r2ucare/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "coda",
    "expm",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "matrixcalc",
    "msm",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "rlang",
    "RMark",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "utf8",
    "vctrs"
  ],
  "_vignettes": [
    {
      "source": "vignette_R2ucare.Rmd",
      "filename": "vignette_R2ucare.html",
      "title": "Introduction to R2ucare",
      "engine": "knitr::rmarkdown",
      "headings": [
        "What it does (and does not do)",
        "Data formats",
        "Read in RMark file",
        "Read in E-SURGE files",
        "Read in Mark files",
        "Goodness-of-fit tests for the Cormack-Jolly-Seber model",
        "Goodness-of-fit tests for the Arnason-Schwarz model",
        "Various useful functions"
      ],
      "created": "2016-08-23 06:47:20",
      "modified": "2022-07-06 06:23:18",
      "commits": 16
    }
  ],
  "_score": 6.154728207440155,
  "_indexed": true,
  "_nocasepkg": "r2ucare",
  "_universes": [
    "oliviergimenez"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-09-26T10:23:58.000Z",
      "distro": "resolute",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/c4dc63b169fb88b2c83d306c0fc9c73c3564b77f9b89c767bb57090eca1f7b55",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-09-26T10:24:04.000Z",
      "distro": "resolute",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/2accb72599fcf778fb47851399d7066f777e14b6db6fc35e85e602e0c7426e2e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-09-26T10:24:27.000Z",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/c3fcd728132fe611e21174233c062ebf0ec87f4cd8cfd8e068a8be03f9e20ded",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-09-26T10:24:03.000Z",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/9e00459ef9eafaefd5c59a87cd53b6af15a33c0f94d1cf609d27d23a82b903b8",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-09-26T10:23:57.000Z",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/1c66e5b7997e8b7e91eea2337587fc5f10a0173ad661480ddb04ec2e05962810",
      "status": "success",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-09-26T10:22:55.000Z",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/a911554329726d59c9dc3b888746e9b954b54e61f7d6da89b6ebcff3f5842039",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-09-26T10:22:52.000Z",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/ab378d4a2e943cf9a6e33a8696d744d622bb53b3cf7b0f08e5c3545b1822c152",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-09-26T10:23:49.000Z",
      "commit": "5959e76258688eaeaad401363068fccb023a73a5",
      "fileid": "https://r2.ropensci.org/62549f20a3981ab2894f135761f2bac1ac4613c89f214c3fb88f57366e17186a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oliviergimenez/actions/runs/36235294657"
    }
  ]
}